neuroml Package¶
neuroml
Package¶
loaders
Module¶
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class
neuroml.loaders.
ArrayMorphLoader
¶ Bases:
object
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classmethod
load
(filepath)¶ Right now this load method isn’t done in a very nice way. TODO: Complete refactoring.
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classmethod
-
class
neuroml.loaders.
JSONLoader
¶ Bases:
object
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classmethod
load
(file)¶
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classmethod
load_from_mongodb
(db, id, host=None, port=None)¶
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classmethod
-
class
neuroml.loaders.
SWCLoader
¶ Bases:
object
WARNING: Class defunct
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classmethod
load_swc_single
(src, name=None)¶
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classmethod
-
neuroml.loaders.
print_
(text, verbose=True)¶
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neuroml.loaders.
read_neuroml2_file
(nml2_file_name, include_includes=False, verbose=False, already_included=[], print_method=<function print_>, optimized=False)¶
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neuroml.loaders.
read_neuroml2_string
(nml2_string, include_includes=False, verbose=False, already_included=[], print_method=<function print_>, optimized=False, base_path=None)¶
writers
Module¶
-
class
neuroml.writers.
ArrayMorphWriter
¶ Bases:
object
For now just testing a simple method which can write a morphology, not a NeuroMLDocument.
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classmethod
write
(data, filepath)¶
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classmethod
-
class
neuroml.writers.
JSONWriter
¶ Bases:
object
Write a NeuroMLDocument to JSON, particularly useful when dealing with lots of ArrayMorphs.
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classmethod
write
(neuroml_document, file)¶
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classmethod
write_to_mongodb
(neuroml_document, db, host=None, port=None, id=None)¶
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classmethod
utils
Module¶
Utilities for checking generated code
-
neuroml.utils.
add_all_to_document
(nml_doc_src, nml_doc_tgt, verbose=False)¶
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neuroml.utils.
append_to_element
(parent, child)¶
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neuroml.utils.
get_summary
(nml_file_name)¶
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neuroml.utils.
has_segment_fraction_info
(connections)¶
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neuroml.utils.
is_valid_neuroml2
(file_name)¶
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neuroml.utils.
main
()¶
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neuroml.utils.
print_summary
(nml_file_name)¶
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neuroml.utils.
validate_neuroml2
(file_name)¶